Metavir: a web server dedicated to virome analysis
نویسندگان
چکیده
SUMMARY Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition to classical approaches for analyzing metagenomes (general sequence characteristics, taxonomic composition), new tools developed specifically for viral sequence analysis make it possible to: (i) explore viral diversity through automatically constructed phylogenies for selected marker genes, (ii) estimate gene richness through rarefaction curves and (iii) perform cross-comparison against other viromes using sequence similarities. Metavir is thus unique as a platform that allows a comprehensive virome analysis. AVAILABILITY Metavir is freely available online at: http://metavir-meb.univ-bpclermont.fr. CONTACT [email protected]. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
منابع مشابه
Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses
In benthic deep-sea ecosystems, which represent the largest biome on Earth, viruses have a recognised key ecological role, but their diversity is still largely unknown. Identifying the taxonomic composition of viruses is crucial for understanding virus-host interactions, their role in food web functioning and evolutionary processes. Here, we compared the performance of various bioinformatic too...
متن کاملInvestigation on Reliability Estimation of Loosely Coupled Software as a Service Execution Using Clustered and Non-Clustered Web Server
Evaluating the reliability of loosely coupled Software as a Service through the paradigm of a cluster-based and non-cluster-based web server is considered to be an important attribute for the service delivery and execution. We proposed a novel method for measuring the reliability of Software as a Service execution through load testing. The fault count of the model against the stresses of users ...
متن کاملبهینهسازی اجرا و پاسخ صفحات وب در فضای ابری با روش‌های پیش‌پردازش، مطالعه موردی سامانه‌های وارنیش و انجینکس
The response speed of Web pages is one of the necessities of information technology. In recent years, renowned companies such as Google and computer scientists focused on speeding up the web. Achievements such as Google Pagespeed, Nginx and varnish are the result of these researches. In Customer to Customer(C2C) business systems, such as chat systems, and in Business to Customer(B2C) systems, s...
متن کاملA density based clustering approach to distinguish between web robot and human requests to a web server
Today world's dependence on the Internet and the emerging of Web 2.0 applications is significantly increasing the requirement of web robots crawling the sites to support services and technologies. Regardless of the advantages of robots, they may occupy the bandwidth and reduce the performance of web servers. Despite a variety of researches, there is no accurate method for classifying huge data ...
متن کاملتشخیص ناهنجاری روی وب از طریق ایجاد پروفایل کاربرد دسترسی
Due to increasing in cyber-attacks, the need for web servers attack detection technique has drawn attentions today. Unfortunately, many available security solutions are inefficient in identifying web-based attacks. The main aim of this study is to detect abnormal web navigations based on web usage profiles. In this paper, comparing scrolling behavior of a normal user with an attacker, and simu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 27 21 شماره
صفحات -
تاریخ انتشار 2011